SMTL ID : 8e8o.1

Cryo-EM structure of human ME3 in the presence of citrate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: R.190, N.284, T.308, V.311, Q.335, G.336, A.337, G.338, E.339, A.340, V.369, D.370, S.371, K.372, K.386, V.414, A.415, A.416, I.417, L.441, S.442, N.443, P.444, G.468, G.487, N.489 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.308 Hydrogen bonds: A:N.284, A:Q.335, A:A.337, A:A.337, A:E.339, A:A.340, A:D.370, A:S.371, A:S.371, A:S.371, A:N.443, A:G.487 Salt bridges: A:R.190, A:K.372, A:K.386 NAP.2: 26 residues within 4Å: Chain B: R.190, N.284, T.308, V.311, Q.335, G.336, A.337, G.338, E.339, A.340, V.369, D.370, S.371, K.372, K.386, V.414, A.415, A.416, I.417, L.441, S.442, N.443, P.444, G.468, G.487, N.489 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.308 Hydrogen bonds: B:N.284, B:Q.335, B:A.337, B:A.337, B:E.339, B:A.340, B:D.370, B:S.371, B:S.371, B:S.371, B:N.443, B:G.487 Salt bridges: B:R.190, B:K.372, B:K.386 NAP.3: 26 residues within 4Å: Chain C: R.190, N.284, T.308, V.311, Q.335, G.336, A.337, G.338, E.339, A.340, V.369, D.370, S.371, K.372, K.386, V.414, A.415, A.416, I.417, L.441, S.442, N.443, P.444, G.468, G.487, N.489 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:T.308 Hydrogen bonds: C:N.284, C:Q.335, C:A.337, C:A.337, C:E.339, C:A.340, C:S.371, C:S.371, C:S.371, C:N.443, C:G.487 Salt bridges: C:R.190, C:K.372, C:K.386 NAP.4: 26 residues within 4Å: Chain D: R.190, N.284, T.308, V.311, Q.335, G.336, A.337, G.338, E.339, A.340, V.369, D.370, S.371, K.372, K.386, V.414, A.415, A.416, I.417, L.441, S.442, N.443, P.444, G.468, G.487, N.489 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:T.308 Hydrogen bonds: D:N.284, D:Q.335, D:A.337, D:A.337, D:E.339, D:A.340, D:S.371, D:S.371, D:S.371, D:N.443, D:G.487 Salt bridges: D:R.190, D:K.372, D:K.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grell, T.A.J. et al., Integrative structural and functional analysis of human malic enzyme 3: A potential therapeutic target for pancreatic cancer. Heliyon (2022)

Release Date

2023-02-08

Peptides

NADP-dependent malic enzyme, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent malic enzyme, mitochondrial

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