- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-14-mer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain B: T.90, D.148, E.149, R.334
- Chain C: R.271
- Ligands: ATP.2
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.90
MG.5: 6 residues within 4Å:- Chain C: T.90, D.148, E.149
- Chain D: E.180, R.271
- Ligands: ATP.4
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:T.90, C:D.148
MG.7: 7 residues within 4Å:- Chain D: T.90, D.148, E.149, R.334
- Chain E: E.180, R.271
- Ligands: ATP.6
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.90
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.8: 18 residues within 4Å:- Chain E: Y.41, V.42, I.43, T.85, G.86, S.87, G.88, K.89, T.90, L.91, D.148, L.281, I.289, P.293, A.333, R.334
- Chain F: E.267, R.271
14 PLIP interactions:10 interactions with chain E, 4 interactions with chain F- Hydrogen bonds: E:I.43, E:I.43, E:T.85, E:G.86, E:G.88, E:T.90, E:L.91, E:D.148, F:E.267, F:E.267, F:R.271
- Salt bridges: E:K.89, E:R.334, F:R.271
ADP.9: 17 residues within 4Å:- Chain F: Y.41, V.42, I.43, T.85, G.86, S.87, G.88, K.89, T.90, L.91, E.94, D.148, L.281, I.289, P.293, A.333, R.334
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:Y.41, F:I.43, F:G.86, F:G.88, F:T.90, F:T.90, F:T.90, F:L.91, F:D.148
- Salt bridges: F:K.89, F:R.334
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ghanbarpour, A. et al., Cryo-EM structure of substrate-free DNClpX.ClpP. Nat Commun (2023)
- Release Date
- 2023-11-08
- Peptides
- ATP-dependent Clp protease ATP-binding subunit ClpX: ABCDEF
ATP-dependent Clp protease proteolytic subunit: GHIJKLMNOPQRST - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
II
JJ
KK
LL
MM
NN
hO
iP
jQ
kR
lS
mT
n
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-14-mer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ghanbarpour, A. et al., Cryo-EM structure of substrate-free DNClpX.ClpP. Nat Commun (2023)
- Release Date
- 2023-11-08
- Peptides
- ATP-dependent Clp protease ATP-binding subunit ClpX: ABCDEF
ATP-dependent Clp protease proteolytic subunit: GHIJKLMNOPQRST - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
HH
II
JJ
KK
LL
MM
NN
hO
iP
jQ
kR
lS
mT
n