SMTL ID : 8e99.1

Human GluN1a-GluN2A-GluN2C triheteromeric NMDA receptor in complex with Nb-4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain C: N.61, A.62, T.63, S.84 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: P.767, N.771 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain D: P.715, N.716 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain D: H.365, N.368 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.365

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: P.767, Q.770, N.771 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.771 NAG.6: 1 residues within 4Å: Chain B: N.702 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural insights into assembly and function of GluN1-2C, GluN1-2A-2C, and GluN1-2D NMDARs. Mol.Cell (2022)

Release Date

2022-12-07

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2A: B
Glutamate receptor ionotropic, NMDA 2C: D
Nanobody 4: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2A

Glutamate receptor ionotropic, NMDA 2C

Nanobody 4

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