SMTL ID : 8e9f.1

WD repeat-containing protein 5 complexed with 4-(7-((1H-imidazol-1-yl)methyl)-5-(1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl)-1-oxo-3,4-dihydroisoquinolin-2(1H)-yl)-6-ethyl-N-methylquinoline-8-carboxamide (compound 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 10 residues within 4Å: Chain A: G.164, C.166, L.180, I.181, D.182, V.188, I.200, A.202, T.204, W.212 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.180, A:I.200, A:A.202, A:W.212, A:W.212, A:W.212 Hydrogen bonds: A:C.166, A:L.180, A:D.182 Water bridges: A:D.182 pi-Stacking: A:W.212

1 x UY9: 6-ethyl-4-[(5P)-7-[(1H-imidazol-1-yl)methyl]-5-[1-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl]-1-oxo-3,4-dihydroisoquinolin-2(1H)-yl]-N-methylquinoline-8-carboxamide(Non-covalent)

UY9.2: 20 residues within 4Å: Chain A: A.18, V.19, S.20, A.36, G.60, I.61, S.62, D.78, F.104, F.120, P.144, V.145, S.146, Y.162, K.230, Y.231, C.232, F.234, I.276, L.292 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.104, A:F.104, A:F.120, A:F.120, A:P.144, A:Y.162, A:Y.231, A:I.276, A:I.276 Hydrogen bonds: A:C.232 Water bridges: A:Y.162 pi-Stacking: A:F.104, A:F.104, A:F.234 Halogen bonds: A:V.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuscher, K.B. et al., Structure-based discovery of potent WD repeat domain 5 inhibitors that demonstrate efficacy and safety in preclinical animal models. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-01-11

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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