SMTL ID : 8ea6.1

NKG2D complexed with inhibitor 3e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

1 x VMB: N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4'-(trifluoromethyl)[1,1'-biphenyl]-2-carboxamide(Non-covalent)

VMB.1: 17 residues within 4Å: Chain A: I.17, F.26, L.58, L.61, V.62, K.63, H.66 Chain B: I.17, Y.24, Q.25, F.26, L.58, L.61, V.62, K.63, H.66, I.123 13 PLIP interactions: 5 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:F.26, A:L.58, A:L.61, B:F.26, B:F.26, B:V.62, B:V.62, B:K.63, B:I.123 Hydrogen bonds: A:L.61, A:K.63, B:K.63 pi-Stacking: B:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.A. et al., Identification of small-molecule protein-protein interaction inhibitors for NKG2D. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-05-03

Peptides

NKG2-D type II integral membrane protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

NKG2-D type II integral membrane protein

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