SMTL ID : 8ea7.1

NKG2D complexed with inhibitor 3g

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 9 residues within 4Å: Chain A: N.15, I.17, Y.24, Q.25, F.26 Chain B: Y.19, D.57, L.58, L.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.26 PEG.3: 8 residues within 4Å: Chain A: Y.19, D.57, L.58, L.61 Chain B: I.17, Y.24, Q.25, F.26 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.26

1 x VMH: (4M)-N-{(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl}-4-(1-methyl-1H-pyrazol-5-yl)-4'-(trifluoromethyl)[1,1'-biphenyl]-2-carboxamide(Non-covalent)

VMH.2: 15 residues within 4Å: Chain A: I.17, F.26, L.61, V.62, K.63, H.66 Chain B: I.17, Y.24, Q.25, F.26, L.58, L.61, V.62, K.63, I.123 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:F.26, B:K.63, B:I.123, A:F.26, A:L.61, A:V.62 Hydrogen bonds: B:K.63, A:L.61, A:K.63 pi-Stacking: B:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.A. et al., Identification of small-molecule protein-protein interaction inhibitors for NKG2D. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-05-03

Peptides

NKG2-D type II integral membrane protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NKG2-D type II integral membrane protein

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