- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: S.345
- Ligands: 08T.3
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:S.345, H2O.1, H2O.1, H2O.1
MG.5: 3 residues within 4Å:- Chain B: S.345, E.403
- Ligands: 08T.6
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:S.345, H2O.1, H2O.1, H2O.1
MG.8: 2 residues within 4Å:- Chain C: S.345
- Ligands: 08T.9
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:S.345, H2O.1, H2O.1, H2O.1
MG.11: 3 residues within 4Å:- Chain D: S.345, E.403
- Ligands: 08T.12
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:S.345, H2O.1, H2O.1, H2O.1
MG.14: 3 residues within 4Å:- Chain E: S.345
- Chain F: R.471
- Ligands: 08T.15
4 PLIP interactions:1 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:S.345, H2O.1, H2O.1, H2O.1
- 5 x 08T: [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium(Non-covalent)
08T.3: 21 residues within 4Å:- Chain A: S.300, I.301, Y.302, D.339, P.340, G.341, T.342, A.343, K.344, S.345, Q.346, N.446, L.489, I.493
- Chain B: E.420, Q.421, R.471, P.557, R.558, E.561
- Ligands: MG.2
16 PLIP interactions:6 interactions with chain B, 10 interactions with chain A- Hydrogen bonds: B:Q.421, B:Q.421, A:Y.302, A:Y.302, A:G.341, A:T.342, A:A.343, A:K.344, A:S.345, A:Q.346
- Water bridges: B:R.471, B:R.471, A:S.345
- Salt bridges: B:R.558, B:R.558, A:K.344
08T.6: 22 residues within 4Å:- Chain B: S.300, I.301, Y.302, D.339, P.340, G.341, T.342, A.343, K.344, S.345, Q.346, E.403, N.446, L.489, I.493
- Chain C: E.420, Q.421, R.471, P.557, R.558, E.561
- Ligands: MG.5
17 PLIP interactions:6 interactions with chain C, 11 interactions with chain B- Hydrogen bonds: C:Q.421, C:Q.421, B:Y.302, B:Y.302, B:G.341, B:T.342, B:A.343, B:K.344, B:S.345, B:Q.346, B:Q.346
- Water bridges: C:R.471, C:R.558, B:S.345
- Salt bridges: C:R.558, C:R.558, B:K.344
08T.9: 21 residues within 4Å:- Chain C: S.300, I.301, Y.302, D.339, P.340, G.341, T.342, A.343, K.344, S.345, Q.346, N.446, L.489, I.493
- Chain D: E.420, Q.421, R.471, P.557, R.558, E.561
- Ligands: MG.8
16 PLIP interactions:11 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:Y.302, C:Y.302, C:G.341, C:T.342, C:A.343, C:K.344, C:S.345, C:Q.346, D:Q.421
- Water bridges: C:K.344, C:S.345, D:R.558, D:R.558
- Salt bridges: C:K.344, D:R.558, D:R.558
08T.12: 22 residues within 4Å:- Chain D: S.300, I.301, Y.302, D.339, P.340, G.341, T.342, A.343, K.344, S.345, Q.346, E.403, N.446, L.489, I.493
- Chain E: E.420, Q.421, R.471, P.557, R.558, E.561
- Ligands: MG.11
16 PLIP interactions:9 interactions with chain D, 7 interactions with chain E- Hydrogen bonds: D:Y.302, D:Y.302, D:G.341, D:T.342, D:A.343, D:K.344, D:S.345, D:Q.346, E:E.420, E:Q.421
- Salt bridges: D:K.344, E:R.558, E:R.558
- Water bridges: E:R.471, E:R.471, E:R.558
08T.15: 22 residues within 4Å:- Chain E: S.300, I.301, Y.302, D.339, P.340, G.341, T.342, A.343, K.344, S.345, Q.346, E.403, N.446, L.489, I.493
- Chain F: E.420, Q.421, R.471, P.557, R.558, E.561
- Ligands: MG.14
16 PLIP interactions:7 interactions with chain F, 9 interactions with chain E- Hydrogen bonds: F:Q.421, F:E.561, E:Y.302, E:Y.302, E:G.341, E:T.342, E:A.343, E:K.344, E:S.345, E:Q.346
- Water bridges: F:R.471, F:R.558, F:R.558
- Salt bridges: F:R.558, F:R.558, E:K.344
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meagher, M. et al., Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation. Int J Mol Sci (2022)
- Release Date
- 2022-12-14
- Peptides
- Minichromosome maintenance protein MCM: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x 08T: [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meagher, M. et al., Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation. Int J Mol Sci (2022)
- Release Date
- 2022-12-14
- Peptides
- Minichromosome maintenance protein MCM: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F