SMTL ID : 8eb5.1

Tandem of Hermes transposase BED domain in complex with the quasi palindrome of its transposon left-end

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.51, C.54, H.71, C.73 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.51, A:C.54, A:H.71, A:C.73 ZN.2: 4 residues within 4Å: Chain D: C.51, C.54, H.71, C.73 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.51, D:C.54, D:H.71, D:C.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lannes, L. et al., Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Hermes transposase BED domain: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

Hermes transposase BED domain