- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 2 x 4MO: MOLYBDENUM(IV) ION(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.4: 12 residues within 4Å:- Chain A: C.23, F.25, C.26, V.28, G.29, C.30, Y.32, S.101, R.103, G.104, T.243, N.244
3 PLIP interactions:3 interactions with chain A,- Metal complexes: A:C.23, A:C.26, A:C.30
F3S.13: 12 residues within 4Å:- Chain D: C.23, F.25, C.26, V.28, G.29, C.30, Y.32, S.101, R.103, G.104, T.243, N.244
3 PLIP interactions:3 interactions with chain D,- Metal complexes: D:C.23, D:C.26, D:C.30
- 2 x O: OXYGEN ATOM(Non-covalent)
O.5: 7 residues within 4Å:- Chain A: H.198, N.199, E.206, K.412
- Ligands: MGD.1, MGD.2, 4MO.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.199, A:K.412, A:K.412, A:H.450
O.14: 7 residues within 4Å:- Chain D: H.198, N.199, E.206, K.412
- Ligands: MGD.10, MGD.11, 4MO.12
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.199, D:K.412
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.7: 4 residues within 4Å:- Chain A: N.601, E.604, R.605, D.623
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.620, A:K.620
PG4.15: 13 residues within 4Å:- Chain D: A.1, F.2, V.102, N.721, V.722, F.735, D.738, R.739
- Chain E: Q.122, Q.123, W.125, G.126, N.131
10 PLIP interactions:4 interactions with chain D, 6 interactions with chain E- Hydrogen bonds: D:F.2, D:N.721, D:V.722, E:Q.122, E:Q.123, E:Q.123, E:W.125, E:G.126, E:N.131
- Water bridges: D:N.721
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.8: 9 residues within 4Å:- Chain B: C.90, H.92, K.93, G.94, F.95, C.108, H.111, F.112, S.113
4 PLIP interactions:4 interactions with chain B,- Metal complexes: B:C.90, B:H.92, B:C.108, B:H.111
FES.16: 9 residues within 4Å:- Chain E: C.90, H.92, K.93, G.94, F.95, C.108, H.111, F.112, S.113
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.90, E:H.92, E:C.108, E:H.111
- 1 x HEC: HEME C(Non-covalent)
HEC.9: 23 residues within 4Å:- Chain B: P.96
- Chain C: K.15, C.16, C.19, H.20, V.30, G.31, P.32, L.34, L.37, R.40, A.43, F.48, Y.50, S.51, F.54, W.64, Y.72, L.73, T.83, K.84, M.85, L.90
21 PLIP interactions:21 interactions with chain C,- Hydrophobic interactions: C:P.32, C:L.34, C:L.34, C:L.37, C:F.48, C:F.54, C:F.54, C:W.64, C:K.84, C:M.85, C:L.90
- Hydrogen bonds: C:A.43, C:Y.50, C:S.51, C:K.84, C:M.85
- Water bridges: C:R.40, C:V.45
- Salt bridges: C:R.40
- pi-Stacking: C:Y.72
- Metal complexes: C:H.20
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.17: 24 residues within 4Å:- Chain F: K.15, C.16, C.19, H.20, V.30, G.31, P.32, L.34, L.37, R.40, A.43, F.48, Y.50, S.51, F.54, W.64, Y.72, L.73, T.83, K.84, M.85, A.86, F.87, L.90
25 PLIP interactions:25 interactions with chain F,- Hydrophobic interactions: F:P.32, F:L.34, F:L.34, F:L.37, F:F.48, F:F.54, F:F.54, F:W.64, F:L.73, F:K.84, F:M.85, F:F.87, F:F.87, F:F.87, F:L.90
- Hydrogen bonds: F:A.43, F:S.51, F:T.83, F:K.84
- Water bridges: F:G.44, F:G.44
- Salt bridges: F:R.40, F:K.84
- pi-Stacking: F:Y.72
- Metal complexes: F:H.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poddar, N. et al., The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c 552. Acta Crystallogr D Struct Biol (2023)
- Release Date
- 2023-04-12
- Peptides
- AroA: AD
AroB: BE
C-type cytochrome c552: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ED
GB
FE
HC
KF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 2 x 4MO: MOLYBDENUM(IV) ION(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x O: OXYGEN ATOM(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 1 x HEC: HEME C(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poddar, N. et al., The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c 552. Acta Crystallogr D Struct Biol (2023)
- Release Date
- 2023-04-12
- Peptides
- AroA: AD
AroB: BE
C-type cytochrome c552: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ED
GB
FE
HC
KF
L