SMTL ID : 8ede.1 (1 other biounit)

Crystal structure of covalent inhibitor 2-chloro-N'-(N-(4-chlorophenyl)-N-methylglycyl)acetohydrazide bound to Ubiquitin C-terminal Hydrolase-L1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x WEU: 2-[(4-chlorophenyl)-methyl-amino]-~{N}'-ethanoyl-ethanehydrazide(Covalent)

WEU.1: 12 residues within 4Å: Chain A: I.8, L.52, Q.84, N.88, S.89, C.90, R.153, V.154, F.160, H.161, F.162, R.178 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.153, A:V.154, A:F.160 Hydrogen bonds: A:Q.84, A:N.88, A:S.89, A:C.90, A:F.160, A:R.178 Water bridges: A:F.162, A:R.178

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.213 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.213 SO4.3: 2 residues within 4Å: Chain A: V.168, D.169 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.169 Salt bridges: A:K.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imhoff, R.D. et al., Covalent Fragment Screening and Optimization Identifies the Chloroacetohydrazide Scaffold as Inhibitors for Ubiquitin C-terminal Hydrolase L1. J.Med.Chem. (2024)

Release Date

2023-09-20

Peptides

Ubiquitin carboxyl-terminal hydrolase isozyme L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase isozyme L1

Related Entries With Identical Sequence