SMTL ID : 8edi.1

Structure of C. elegans UNC-5 IG 1+2 Domains bound to Heparin dp4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 3 residues within 4Å: Chain A: D.152, N.182, E.200 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.2: 4 residues within 4Å: Chain B: D.152, G.181, N.182, E.200 No protein-ligand interaction detected (PLIP)

1 x SGN- IDS- SGN- UAP: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

SGN-IDS-SGN-UAP.3: 16 residues within 4Å: Chain A: R.21, N.22, M.113, K.115, N.192, S.193, R.194, K.195 Chain B: R.21, N.22, K.23, P.24, D.71, S.73, R.74, I.75 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.22, B:N.22, B:R.74, B:I.75, A:R.21, A:R.21, B:N.22, A:M.113, A:N.192, A:R.194 Salt bridges: A:K.115, A:R.21, A:K.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priest, J.M. et al., Structure of C. elegans UNC-5 IG 1+2 Domains. To Be Published

Release Date

2023-01-11

Peptides

Netrin receptor unc-5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Netrin receptor unc-5

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