SMTL ID : 8edv.2 (1 other biounit)

Mitoguardin homolog (MIGA) delta TM residues 106-496 from Caenorhabditis elegans bound to modelled lipid phosphatidylethanolamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.1: 25 residues within 4Å: Chain A: T.181, L.184, R.190, L.193, A.194, G.197, L.201, Y.219, M.222, L.223, V.226, T.247, G.248, F.249, V.252, A.253, I.257, I.258, F.262, F.311, F.315, I.318, F.344, M.377, L.381 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.193, A:A.194, A:L.201, A:V.226, A:F.249, A:F.249, A:F.249, A:V.252, A:I.257, A:I.258, A:I.258, A:F.315, A:F.344, A:F.344, A:L.381, A:L.381 Hydrogen bonds: A:T.247, A:F.249 Salt bridges: A:R.190 PEF.2: 29 residues within 4Å: Chain B: T.181, L.184, R.190, L.193, A.194, G.197, R.198, L.201, Y.219, M.222, L.223, V.226, E.232, R.236, T.247, G.248, F.249, V.252, A.253, I.254, I.257, I.258, A.261, F.311, F.315, I.318, F.344, M.377, L.381 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.193, B:A.194, B:L.201, B:F.249, B:F.249, B:F.249, B:I.257, B:I.258, B:I.258, B:F.315 Hydrogen bonds: B:E.232, B:R.236, B:T.247 Salt bridges: B:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, Z. et al., Mitoguardin-2-mediated lipid transfer preserves mitochondrial morphology and lipid droplet formation. J.Cell Biol. (2022)

Release Date

2022-10-12

Peptides

MItoGuArdin homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

MItoGuArdin homolog

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