SMTL ID : 8ef0.1

Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ104-D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.178 Chain B: D.148 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.148, A:H.178, H2O.3, H2O.5 ZN.2: 1 residues within 4Å: Chain B: H.207 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.207, H2O.5, H2O.5 ZN.3: 1 residues within 4Å: Chain B: H.198 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, H2O.5

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain B: S.32, K.33, N.34 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.34, B:N.34 Water bridges: B:Y.36, B:Y.36, B:Y.99 Salt bridges: B:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sankhala, R.S. et al., Zika-specific neutralizing antibodies targeting inter-dimer envelope epitopes. Cell Rep (2023)

Release Date

2023-08-30

Peptides

rhMZ104-D antibody heavy chain: A
rhMZ104-D antibody light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

rhMZ104-D antibody heavy chain

rhMZ104-D antibody light chain

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