- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x USU: (5S,6S,9aS)-N-[(4-fluorophenyl)methyl]-6-methyl-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide(Non-covalent)
USU.2: 13 residues within 4Å:- Chain A: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain B: L.49, F.50, A.53, H.83
13 PLIP interactions:3 interactions with chain B, 10 interactions with chain A- Hydrophobic interactions: B:L.49, B:L.49, B:A.53, A:L.24, A:D.27, A:I.29, A:I.29, A:Y.61, A:W.63, A:I.91, A:I.93
- Hydrogen bonds: A:D.27, A:D.27
USU.4: 13 residues within 4Å:- Chain B: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain C: L.49, F.50, A.53, H.83
14 PLIP interactions:11 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:L.24, B:D.27, B:I.29, B:I.29, B:Y.61, B:W.63, B:W.63, B:I.91, B:I.93, C:L.49, C:L.49, C:A.53
- Hydrogen bonds: B:D.27, B:D.27
USU.6: 13 residues within 4Å:- Chain C: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain D: L.49, F.50, A.53, H.83
13 PLIP interactions:9 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:L.24, C:D.27, C:I.29, C:I.29, C:W.63, C:I.91, C:I.93, D:L.49, D:L.49, D:A.53
- Hydrogen bonds: C:D.27, C:D.27
- Water bridges: D:Q.52
USU.8: 13 residues within 4Å:- Chain D: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain E: L.49, F.50, A.53, H.83
12 PLIP interactions:3 interactions with chain E, 9 interactions with chain D- Hydrophobic interactions: E:L.49, E:L.49, E:A.53, D:L.24, D:D.27, D:I.29, D:Y.61, D:W.63, D:W.63, D:I.91, D:I.93
- Hydrogen bonds: D:D.27
USU.10: 13 residues within 4Å:- Chain E: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain F: L.49, F.50, A.53, H.83
11 PLIP interactions:8 interactions with chain E, 3 interactions with chain F- Hydrophobic interactions: E:L.24, E:D.27, E:I.29, E:Y.61, E:W.63, E:W.63, E:I.93, F:L.49, F:L.49, F:A.53
- Hydrogen bonds: E:D.27
USU.12: 13 residues within 4Å:- Chain F: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain G: L.49, F.50, A.53, H.83
14 PLIP interactions:11 interactions with chain F, 3 interactions with chain G- Hydrophobic interactions: F:L.24, F:D.27, F:I.29, F:I.29, F:Y.61, F:W.63, F:W.63, F:I.91, F:I.93, G:L.49, G:L.49, G:A.53
- Hydrogen bonds: F:D.27
- Water bridges: F:Y.61
USU.15: 13 residues within 4Å:- Chain H: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain I: L.49, F.50, A.53, H.83
15 PLIP interactions:11 interactions with chain H, 4 interactions with chain I- Hydrophobic interactions: H:L.24, H:D.27, H:I.29, H:Y.61, H:W.63, H:W.63, H:W.63, H:I.91, H:I.93, I:L.49, I:L.49, I:A.53
- Hydrogen bonds: H:D.27, H:D.27
- Water bridges: I:Q.52
USU.17: 11 residues within 4Å:- Chain I: R.23, L.24, D.27, I.29, Y.61, W.63, I.91
- Chain J: L.49, F.50, A.53, H.83
13 PLIP interactions:9 interactions with chain I, 4 interactions with chain J- Hydrophobic interactions: I:L.24, I:I.29, I:I.29, I:Y.61, I:W.63, I:W.63, I:I.91, J:L.49, J:L.49, J:A.53
- Hydrogen bonds: I:D.27, I:D.27
- Water bridges: J:Q.52
USU.20: 13 residues within 4Å:- Chain K: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain L: L.49, F.50, A.53, H.83
13 PLIP interactions:9 interactions with chain K, 4 interactions with chain L- Hydrophobic interactions: K:L.24, K:D.27, K:I.29, K:Y.61, K:W.63, K:W.63, K:W.63, K:I.93, L:L.49, L:L.49, L:L.49, L:A.53
- Hydrogen bonds: K:D.27
USU.22: 12 residues within 4Å:- Chain L: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, M.190
- Chain M: L.49, F.50, A.53, H.83
11 PLIP interactions:8 interactions with chain L, 3 interactions with chain M- Hydrophobic interactions: L:L.24, L:D.27, L:I.29, L:I.29, L:Y.61, L:W.63, L:I.91, M:L.49, M:L.49, M:A.53
- Hydrogen bonds: L:D.27
USU.24: 13 residues within 4Å:- Chain M: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
- Chain N: L.49, F.50, A.53, H.83
13 PLIP interactions:10 interactions with chain M, 3 interactions with chain N- Hydrophobic interactions: M:L.24, M:D.27, M:I.29, M:I.29, M:Y.61, M:W.63, M:W.63, M:I.91, M:I.93, N:L.49, N:A.53
- Hydrogen bonds: M:D.27
- Water bridges: N:Q.52
USU.26: 13 residues within 4Å:- Chain H: L.49, F.50, A.53, H.83
- Chain N: R.23, L.24, D.27, I.29, Y.61, W.63, I.91, I.93, M.190
10 PLIP interactions:2 interactions with chain H, 8 interactions with chain N- Hydrophobic interactions: H:L.49, H:A.53, N:L.24, N:I.29, N:I.29, N:Y.61, N:W.63, N:W.63, N:I.93
- Hydrogen bonds: N:D.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, A.C. et al., Development of a high throughput and site specific, fluorescent polarization assay to screen for activators of Caseinolytic Protease P leads to the discovery of synthetically tractable new activator class. To Be Published
- Release Date
- 2023-07-19
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
II
KJ
LK
ML
NM
SN
T
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x USU: (5S,6S,9aS)-N-[(4-fluorophenyl)methyl]-6-methyl-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, A.C. et al., Development of a high throughput and site specific, fluorescent polarization assay to screen for activators of Caseinolytic Protease P leads to the discovery of synthetically tractable new activator class. To Be Published
- Release Date
- 2023-07-19
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
II
KJ
LK
ML
NM
SN
T