SMTL ID : 8efj.1

A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 12 residues within 4Å: Chain A: L.202, N.203, W.204, M.205, H.206, K.256, I.257, S.258, A.262, Y.265, I.266 Ligands: BOG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.204, A:I.257, A:Y.265 Hydrogen bonds: A:N.203, A:W.204, A:K.256, A:S.258 Water bridges: A:S.259 BOG.2: 18 residues within 4Å: Chain A: P.198, E.199, L.202, W.204, H.206, Y.207, N.208, P.249, L.253, K.256, I.257, I.266, L.298, D.299, S.300, D.301, R.303 Ligands: BOG.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.198, A:P.198, A:W.204, A:W.204, A:P.249, A:I.257, A:L.298 Hydrogen bonds: A:W.204, A:K.256, A:K.256, A:S.300 Water bridges: A:N.208

1 x WHQ: (4P)-4-[5-(2-chloro-6-fluoroanilino)-6-(methoxymethyl)-1H-indazol-1-yl]-N-methylthiophene-2-carboxamide(Non-covalent)

WHQ.3: 20 residues within 4Å: Chain A: Y.42, V.45, A.58, V.59, K.60, L.82, I.91, L.93, L.111, V.112, T.113, H.114, L.115, M.116, G.117, D.119, S.161, N.162, L.174, D.175 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.58, A:K.60, A:L.82, A:L.111, A:T.113, A:L.115 Hydrogen bonds: A:M.116, A:M.116, A:D.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H. et al., A structural study of selectivity mechanisms for JNK3 and p38 alpha with indazole scaffold probing compounds. To Be Published

Release Date

2023-09-20

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14