- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.97, E.98, A.144
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.97, A:D.97, A:E.98
MG.4: 2 residues within 4Å:- Chain B: E.98
- Ligands: AGS.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.98
MG.6: 3 residues within 4Å:- Chain C: E.98, H.100, T.146
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:E.98
MG.8: 1 residues within 4Å:- Chain D: E.98
No protein-ligand interaction detected (PLIP)MG.12: 5 residues within 4Å:- Chain I: T.52, D.97, E.98, A.144
- Ligands: ADP.11
2 PLIP interactions:2 interactions with chain I- Metal complexes: I:D.97, I:D.97
MG.14: 2 residues within 4Å:- Chain J: E.98
- Ligands: AGS.13
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:E.98
MG.16: 3 residues within 4Å:- Chain K: E.98, H.100, T.146
2 PLIP interactions:2 interactions with chain K- Metal complexes: K:E.98, K:T.146
MG.18: 2 residues within 4Å:- Chain L: P.47
- Ligands: AGS.17
No protein-ligand interaction detected (PLIP)- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)
AGS.3: 20 residues within 4Å:- Chain A: E.115, R.158
- Chain B: A.5, L.6, R.7, P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168, M.204, R.205, K.208
- Ligands: MG.4
20 PLIP interactions:17 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:I.15, B:G.48, B:L.49, B:G.50, B:K.51, B:K.51, B:T.52, B:T.52, B:T.53, B:Y.168, B:Y.168, B:R.205, B:R.205, A:E.115, A:R.158, A:R.158
- Salt bridges: B:R.7, B:K.51, B:R.205, B:R.205
AGS.5: 19 residues within 4Å:- Chain B: E.115, R.158
- Chain C: A.5, L.6, R.7, P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168, M.204, R.205, K.208
20 PLIP interactions:20 interactions with chain C- Hydrogen bonds: C:L.6, C:R.7, C:I.15, C:G.16, C:G.48, C:L.49, C:G.50, C:K.51, C:T.52, C:T.52, C:T.53, C:Y.168, C:Y.168, C:R.205, C:R.205, C:K.208
- Salt bridges: C:R.7, C:K.51, C:R.205, C:R.205
AGS.7: 14 residues within 4Å:- Chain C: R.158
- Chain D: R.7, P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168, M.204
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:R.7, D:I.15, D:L.49, D:G.50, D:K.51, D:T.52, D:Y.168, D:Y.168
- Salt bridges: D:K.51
AGS.13: 21 residues within 4Å:- Chain I: E.115, P.154, R.158
- Chain J: A.5, L.6, R.7, P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168, M.204, R.205, K.208
- Ligands: MG.14
21 PLIP interactions:19 interactions with chain J, 2 interactions with chain I- Hydrogen bonds: J:L.4, J:I.15, J:G.48, J:L.49, J:G.50, J:K.51, J:K.51, J:T.52, J:T.52, J:T.53, J:Y.168, J:Y.168, J:R.205, J:R.205, J:K.208, I:R.158, I:R.158
- Salt bridges: J:R.7, J:K.51, J:R.205, J:R.205
AGS.15: 19 residues within 4Å:- Chain J: E.115, R.158
- Chain K: A.5, L.6, R.7, P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168, M.204, R.205, K.208
17 PLIP interactions:17 interactions with chain K- Hydrogen bonds: K:L.6, K:I.15, K:L.49, K:G.50, K:K.51, K:T.52, K:T.52, K:T.53, K:Y.168, K:Y.168, K:R.205, K:R.205, K:K.208
- Salt bridges: K:R.7, K:K.51, K:R.205, K:R.205
AGS.17: 13 residues within 4Å:- Chain K: R.158
- Chain L: P.8, Y.14, I.15, P.47, G.48, L.49, G.50, K.51, T.52, T.53, Y.168
- Ligands: MG.18
7 PLIP interactions:7 interactions with chain L- Hydrogen bonds: L:I.15, L:L.49, L:K.51, L:T.52, L:Y.168, L:Y.168
- Salt bridges: L:K.51
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rish, A.D. et al., Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate. To Be Published
- Release Date
- 2023-05-10
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEFIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FI
IJ
JK
KL
LM
MN
N
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 6 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rish, A.D. et al., Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate. To Be Published
- Release Date
- 2023-05-10
- Peptides
- Holliday junction ATP-dependent DNA helicase RuvB: ABCDEFIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FI
IJ
JK
KL
LM
MN
N