- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.69 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 18 x CA: CALCIUM ION(Non-covalent)
CA.4: 6 residues within 4Å:- Chain A: N.129, N.131, D.161, D.163, N.167, D.224
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.161, A:D.161, A:D.163, A:N.167, A:D.224
CA.5: 6 residues within 4Å:- Chain A: N.244, N.246, D.276, D.278, N.282, D.327
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:N.246, A:D.276, A:D.278, A:N.282, A:D.327
CA.6: 6 residues within 4Å:- Chain A: E.261, D.312, F.313, E.314, D.348
- Ligands: CA.7
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.261, A:D.312, A:E.314, A:D.348, A:D.348
CA.7: 7 residues within 4Å:- Chain A: E.261, E.314, D.345, V.346, D.348, D.386
- Ligands: CA.6
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.261, A:E.314, A:V.346, A:D.348, A:D.386
CA.8: 6 residues within 4Å:- Chain A: N.347, N.349, D.384, D.386, N.391, D.442
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:N.349, A:D.384, A:D.442, A:D.442
CA.9: 7 residues within 4Å:- Chain A: E.146, E.211, D.242, I.243, D.245, D.278
- Ligands: CA.10
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.146, A:E.211, A:D.242, A:I.243, A:D.245
CA.10: 6 residues within 4Å:- Chain A: E.146, D.147, D.209, E.211, D.245
- Ligands: CA.9
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.146, A:D.147, A:D.209, A:E.211, A:D.245
CA.11: 6 residues within 4Å:- Chain A: E.53, E.99, D.127, D.130, D.163
- Ligands: CA.12
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.53, A:E.99, A:D.127, A:D.130, A:D.163
CA.12: 6 residues within 4Å:- Chain A: E.53, D.97, R.98, E.99, D.130
- Ligands: CA.11
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.53, A:E.53, A:E.99, A:D.130, A:D.130
CA.15: 6 residues within 4Å:- Chain B: E.12, E.69, D.94, I.95, D.97, D.130
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.12, B:E.69, B:D.94, B:I.95, B:D.97
CA.16: 5 residues within 4Å:- Chain B: N.96, H.98, D.130, L.134, D.188
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.98, B:D.130, B:D.130, B:D.188
CA.17: 6 residues within 4Å:- Chain B: E.113, E.175, D.206, I.207, D.209, D.242
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.175, B:D.206, B:I.207, B:D.209, B:D.242
CA.18: 5 residues within 4Å:- Chain B: H.210, D.240, D.242, N.246, D.295
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.210, B:D.240, B:D.242, B:N.246, B:D.295
CA.19: 5 residues within 4Å:- Chain B: E.225, E.282, D.313, A.314, D.316
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.225, B:E.282, B:D.313, B:A.314, B:D.316
CA.20: 3 residues within 4Å:- Chain B: R.255, S.258, D.261
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:S.258, B:D.261
CA.21: 4 residues within 4Å:- Chain B: N.315, N.317, P.352, D.405
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:N.317, B:D.405
CA.22: 6 residues within 4Å:- Chain B: E.12, E.13, D.67, E.69, D.97, H.98
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.12, B:E.13, B:D.67, B:E.69, B:D.97
CA.23: 4 residues within 4Å:- Chain B: E.225, D.280, E.282, N.317
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.282
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, E. et al., Structure of the planar cell polarity cadherins Fat4 and Dachsous1. Nat Commun (2023)
- Release Date
- 2023-02-22
- Peptides
- Protocadherin Fat 4: A
Protocadherin-16: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.69 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 18 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, E. et al., Structure of the planar cell polarity cadherins Fat4 and Dachsous1. Nat Commun (2023)
- Release Date
- 2023-02-22
- Peptides
- Protocadherin Fat 4: A
Protocadherin-16: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A