SMTL ID : 8ei1.1

Crystal structure of the N-terminal domain of CUL4B in complex with H316, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-4-4-mer

Ligands

4 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.1: 5 residues within 4Å: Chain A: R.352 Chain E: C.8, A.11, A.12, C.15 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:A.11, E:A.12 Hydrogen bonds: A:R.352, A:R.352 WHL.2: 5 residues within 4Å: Chain B: R.352 Chain F: C.8, A.11, A.12, C.15 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:R.352, B:R.352 Hydrophobic interactions: F:A.11, F:A.12 WHL.3: 4 residues within 4Å: Chain G: C.8, A.11, A.12, C.15 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:A.11 WHL.4: 4 residues within 4Å: Chain H: W.7, C.8, A.11, C.15 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:A.11 Hydrogen bonds: H:A.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

Cullin-4B: ABCD
H316: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Cullin-4B

H316

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