SMTL ID : 8ei4.1

Crystal structure of the WWP1 HECT domain in complex with H302, a Helicon Polypeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: P.329, Q.330, K.331 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.331 EDO.3: 2 residues within 4Å: Chain A: D.111, S.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.111, A:S.114 EDO.4: 2 residues within 4Å: Chain A: R.52, E.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.52, A:R.52

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.5: 7 residues within 4Å: Chain A: G.178, L.179, E.180 Chain B: C.8, A.11, A.12, C.15 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.11, B:A.12 Hydrogen bonds: A:E.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

NEDD4-like E3 ubiquitin-protein ligase WWP1: A
H302: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NEDD4-like E3 ubiquitin-protein ligase WWP1

H302