SMTL ID : 8ejb.1

Bruton's tyrosine kinase in complex with 3-{[4-(1-acetylpiperidin-4-yl)phenyl]amino}-5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]pyrazine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x WKC: 5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide(Non-covalent)

WKC.1: 16 residues within 4Å: Chain A: L.20, T.22, G.23, V.28, A.40, K.42, T.86, E.87, Y.88, M.89, A.90, N.91, G.92, C.93, N.96, L.140 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:Y.88 Hydrogen bonds: A:K.42, A:E.87, A:M.89, A:M.89, A:C.93 Water bridges: A:T.86, A:S.150

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: G.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.47 EDO.3: 6 residues within 4Å: Chain A: T.107, Q.108, L.111, Y.203, V.238, E.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.203, A:E.270 Water bridges: A:T.107, A:T.107, A:S.235

1 x PD: PALLADIUM ION(Non-covalent)

PD.4: 1 residues within 4Å: Chain A: R.80 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: P.231, H.232 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, D. et al., NRX-0492 degrades wild-type and C481 mutant BTK and demonstrates in vivo activity in CLL patient-derived xenografts. Blood (2023)

Release Date

2023-02-15

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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