- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-3-mer
- Ligands
- 12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN.2: 13 residues within 4Å:- Chain A: K.88, N.89, N.90, S.91, H.92
- Chain I: L.4, F.32, Y.99, Y.101, D.112, V.113
- Chain J: T.56
- Ligands: MAN.35
3 PLIP interactions:1 interactions with chain I, 2 interactions with chain J- Hydrogen bonds: I:Y.99, I:L.4, J:T.56, J:T.56
NAG-NAG-BMA-MAN-MAN.9: 13 residues within 4Å:- Chain B: K.88, N.89, N.90, S.91, H.92
- Chain K: L.4, F.32, Y.99, Y.101, D.112, V.113
- Chain L: T.56
- Ligands: MAN.36
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain L- Hydrogen bonds: K:Y.99, K:L.4, L:T.56, L:T.56
NAG-NAG-BMA-MAN-MAN.18: 13 residues within 4Å:- Chain D: K.88, N.89, N.90, S.91, H.92
- Chain G: L.4, F.32, Y.99, Y.101, D.112, V.113
- Chain H: T.56
- Ligands: MAN.34
3 PLIP interactions:1 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:Y.99, G:L.4, H:T.56, H:T.56
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 2 residues within 4Å:- Chain A: M.80, N.99
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 5 residues within 4Å:- Chain A: H.115, F.117, N.119, C.155, N.158
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 2 residues within 4Å:- Chain B: M.80, N.99
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 5 residues within 4Å:- Chain B: H.115, F.117, N.119, C.155, N.158
No protein-ligand interaction detected (PLIP)NAG-NAG.16: 6 residues within 4Å:- Chain C: K.32, C.33, F.34, Y.112, N.114, T.121
No protein-ligand interaction detected (PLIP)NAG-NAG.19: 2 residues within 4Å:- Chain D: M.80, N.99
No protein-ligand interaction detected (PLIP)NAG-NAG.21: 5 residues within 4Å:- Chain D: H.115, F.117, N.119, C.155, N.158
No protein-ligand interaction detected (PLIP)NAG-NAG.25: 6 residues within 4Å:- Chain E: K.32, C.33, F.34, Y.112, N.114, T.121
No protein-ligand interaction detected (PLIP)NAG-NAG.27: 6 residues within 4Å:- Chain F: K.32, C.33, F.34, Y.112, N.114, T.121
No protein-ligand interaction detected (PLIP)- 3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-MAN-MAN-MAN.15: 13 residues within 4Å:- Chain A: M.75, Y.200, D.229, C.231, Q.232, F.233, S.234, R.235, S.237
- Chain C: N.106, S.108, G.132, Y.134
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.232
NAG-NAG-BMA-MAN-MAN-MAN-MAN.24: 13 residues within 4Å:- Chain B: M.75, Y.200, D.229, C.231, Q.232, F.233, S.234, R.235, S.237
- Chain E: N.106, S.108, G.132, Y.134
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.232
NAG-NAG-BMA-MAN-MAN-MAN-MAN.26: 13 residues within 4Å:- Chain D: M.75, Y.200, D.229, C.231, Q.232, F.233, S.234, R.235, S.237
- Chain F: N.106, S.108, G.132, Y.134
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.232
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.28: 3 residues within 4Å:- Chain C: C.101, S.130, N.131
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.130, C:N.131
NAG.29: 2 residues within 4Å:- Chain C: N.136, H.139
No protein-ligand interaction detected (PLIP)NAG.30: 3 residues within 4Å:- Chain E: C.101, S.130, N.131
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:S.130, E:N.131
NAG.31: 2 residues within 4Å:- Chain E: N.136, H.139
No protein-ligand interaction detected (PLIP)NAG.32: 3 residues within 4Å:- Chain F: C.101, S.130, N.131
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:S.130, F:N.131
NAG.33: 2 residues within 4Å:- Chain F: N.136, H.139
No protein-ligand interaction detected (PLIP)- 3 x MAN: alpha-D-mannopyranose(Non-covalent)
MAN.34: 3 residues within 4Å:- Chain G: E.27, S.28
- Ligands: NAG-NAG-BMA-MAN-MAN.18
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:E.27, G:S.28
MAN.35: 3 residues within 4Å:- Chain I: E.27, S.28
- Ligands: NAG-NAG-BMA-MAN-MAN.2
2 PLIP interactions:2 interactions with chain I- Hydrogen bonds: I:E.27, I:S.28
MAN.36: 3 residues within 4Å:- Chain K: E.27, S.28
- Ligands: NAG-NAG-BMA-MAN-MAN.9
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:E.27, K:S.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Perrett, H.R. et al., Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies. Cell Rep (2023)
- Release Date
- 2023-06-07
- Peptides
- Glycoprotein G1: ABD
Glycoprotein G2: CEF
12.1F Fab heavy chain: GIK
12.1F Fab light chain: HJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
BD
AC
cE
bF
aG
HI
JK
hH
LJ
KL
l
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-3-3-mer
- Ligands
- 12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x MAN: alpha-D-mannopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Perrett, H.R. et al., Structural conservation of Lassa virus glycoproteins and recognition by neutralizing antibodies. Cell Rep (2023)
- Release Date
- 2023-06-07
- Peptides
- Glycoprotein G1: ABD
Glycoprotein G2: CEF
12.1F Fab heavy chain: GIK
12.1F Fab light chain: HJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
BD
AC
cE
bF
aG
HI
JK
hH
LJ
KL
l