SMTL ID : 8ejv.1

The crystal structure of Pseudomonas putida PcaR in complex with succinate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-dimer

Ligands

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 8 residues within 4Å: Chain A: Y.151, T.177, S.178, V.230, L.238, S.240, N.257, S.259 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.238 Hydrogen bonds: A:Y.151, A:Y.151, A:S.178, A:S.240, A:N.257, A:S.259 SIN.4: 11 residues within 4Å: Chain B: N.140, Y.151, L.172, T.177, S.178, V.230, L.234, L.238, S.240, N.257, S.259 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.172, B:L.234, B:L.238 Hydrogen bonds: B:Y.151, B:Y.151, B:S.178, B:S.240, B:N.257

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.126, Y.127, R.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.130

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: D.97, R.99, T.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.97, A:T.100, A:T.100 Salt bridges: A:R.99

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain B: S.206 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: M.45 Chain B: S.47, R.50, A.80, R.83 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: D.231 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, C. et al., The crystal structure of Pseudomonas putida PcaR in complex with succinate. To Be Published

Release Date

2024-03-20

Peptides

Transcription regulatory protein (Pca regulon): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcription regulatory protein (Pca regulon)

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