SMTL ID : 8el1.2 (3 other biounits)

Structure of MBP-Mcl-1 in complex with ABBV-467

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.27, D.29, K.30, E.59, W.77, A.78, D.80, R.81, E.126, E.168, P.169, Y.170, F.171, W.245, M.345, W.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.59, A:D.80, A:R.81, A:Y.170

1 x WME: (7R,16R)-19,23-dichloro-10-{[2-(4-{[(2R)-1,4-dioxan-2-yl]methoxy}phenyl)pyrimidin-4-yl]methoxy}-1-(4-fluorophenyl)-20,22-dimethyl-16-[(4-methylpiperazin-1-yl)methyl]-7,8,15,16-tetrahydro-18,21-etheno-13,9-(metheno)-6,14,17-trioxa-2-thia-3,5-diazacyclononadeca[1,2,3-cd]indene-7-carboxylic acid(Non-covalent)

WME.2: 15 residues within 4Å: Chain A: H.435, A.438, F.439, G.441, M.442, L.446, M.461, V.464, F.465, G.473, R.474, T.477, L.478, F.481, F.530 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.461, A:T.477, A:F.481, A:F.481, A:F.481, A:F.530 Salt bridges: A:R.474 pi-Stacking: A:H.435 Halogen bonds: A:A.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuda, J. et al., Selective MCL-1 inhibitor ABBV-467 is efficacious in tumor models but is associated with cardiac troponin increases in patients. Commun Med (Lond) (2023)

Release Date

2023-10-25

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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