SMTL ID : 8el2.2 (1 other biounit)

SARS-CoV-2 RBD bound to neutralizing antibody Fab ICO-hu23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain B: D.87 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 4 residues within 4Å: Chain C: G.23, F.26, N.27, L.52 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.26, C:L.52 Hydrogen bonds: C:N.27

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain C: P.110, D.112, F.113, T.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.112, C:T.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hermet, P. et al., Broadly neutralizing humanized SARS-CoV-2 antibody binds to a conserved epitope on Spike and provides antiviral protection through inhalation-based delivery in non-human primates. Plos Pathog. (2023)

Release Date

2023-07-19

Peptides

Fab ICO-hu23 Heavy Chain: A
Fab ICO-hu23 Light Chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
K

C
B

Fab ICO-hu23 Heavy Chain

Fab ICO-hu23 Light Chain

Spike protein S1

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