SMTL ID : 8emt.1

Cryo-EM analysis of the human aldehyde oxidase from liver

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)(Covalent)

FES.1: 8 residues within 4Å: Chain A: C.114, G.115, C.117, C.149, R.150, C.151, T.152, M.753 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.117, A:C.149, A:C.151 FES.2: 10 residues within 4Å: Chain A: G.43, C.44, G.45, G.47, C.49, G.50, A.51, C.52, N.72, C.74 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.44, A:C.49, A:C.52, A:C.74 FES.6: 8 residues within 4Å: Chain B: C.114, G.115, C.117, T.118, C.149, R.150, C.151, M.753 5 PLIP interactions: 5 interactions with chain B, Metal complexes: B:C.114, B:C.117, B:C.149, B:C.151, B:C.151 FES.7: 10 residues within 4Å: Chain B: G.43, C.44, G.45, G.47, G.48, C.49, G.50, C.52, N.72, C.74 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.44, B:C.49, B:C.52, B:C.74

2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)

MTE.3: 19 residues within 4Å: Chain A: Q.113, C.151, G.805, A.806, F.807, R.921, M.1047, G.1048, Q.1049, G.1088, S.1089, V.1090, V.1091, A.1092, Q.1203, L.1268, G.1269, E.1270 Ligands: MOS.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.113, A:A.806, A:R.921, A:M.1047, A:V.1091, A:A.1092, A:Q.1203, A:Q.1203 MTE.8: 16 residues within 4Å: Chain B: Q.113, G.805, A.806, F.807, G.808, R.921, M.1047, G.1048, Q.1049, G.1088, S.1089, V.1091, A.1092, Q.1203, G.1269 Ligands: MOS.9 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Q.113, B:A.806, B:R.921, B:M.1047, B:Q.1049, B:S.1089, B:V.1091, B:A.1092, B:Q.1203, B:Q.1203 pi-Stacking: B:F.807

2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)

MOS.4: 9 residues within 4Å: Chain A: Q.776, G.808, A.919, F.920, S.1086, G.1087, G.1088, E.1270 Ligands: MTE.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.776 MOS.9: 9 residues within 4Å: Chain B: G.808, G.809, A.919, F.920, S.1086, G.1087, G.1088, E.1270 Ligands: MTE.8 No protein-ligand interaction detected (PLIP)

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 22 residues within 4Å: Chain A: G.46, G.47, P.263, V.264, I.265, M.266, G.267, N.268, T.269, S.270, V.271, L.344, A.345, A.353, S.354, G.357, H.358, I.360, D.367, I.410, L.411, R.1231 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.345 Hydrogen bonds: A:V.264, A:M.266, A:G.267, A:N.268, A:T.269, A:T.269, A:S.270, A:V.271, A:A.345, A:D.367, A:L.411, A:L.411 FAD.10: 21 residues within 4Å: Chain B: P.263, V.264, I.265, M.266, G.267, T.269, S.270, V.271, P.273, L.344, A.345, A.353, S.354, G.357, H.358, I.360, H.363, D.367, L.411, A.437, L.438 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:P.273, B:A.345 Hydrogen bonds: B:V.264, B:T.269, B:T.269, B:S.270, B:V.271, B:A.345, B:M.352, B:S.354, B:H.363, B:D.367, B:D.367, B:D.367, B:L.411

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, C.C. et al., High-resolution structural-omics of human liver enzymes. Cell Rep (2023)

Release Date

2023-05-10

Peptides

Aldehyde oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Aldehyde oxidase

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