SMTL ID : 8en3.1

Structure of GII.17 norovirus in complex with Nanobody 45

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.3, Y.240, Q.241, S.243 Chain B: I.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.3, A:K.3, A:S.243 EDO.2: 4 residues within 4Å: Chain A: I.9 Chain B: Y.240, Q.241, S.243 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.9 Water bridges: B:Q.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kher, G. et al., Direct Blockade of the Norovirus Histo-Blood Group Antigen Binding Pocket by Nanobodies. J.Virol. (2023)

Release Date

2023-03-15

Peptides

Capsid protein VP1: AB
Nanobody 45: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein VP1

Nanobody 45

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