SMTL ID : 8en7.1

Mouse apoferritin heavy chain without zinc determined using single-particle cryo-EM with Apollo camera.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: L.165, H.169 Chain B: H.169 Chain C: H.169 Chain H: L.165, H.169 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Metal complexes: H:H.169, A:H.169, B:H.169, C:H.169 FE.2: 6 residues within 4Å: Chain D: L.165, H.169 Chain E: H.169 Chain M: L.165, H.169 Chain N: H.169 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain D, 1 interactions with chain E, 1 interactions with chain M Metal complexes: N:H.169, D:H.169, E:H.169, M:H.169 FE.3: 6 residues within 4Å: Chain F: L.165, H.169 Chain G: H.169 Chain V: H.169 Chain X: L.165, H.169 4 PLIP interactions: 1 interactions with chain X, 1 interactions with chain V, 1 interactions with chain F, 1 interactions with chain G Metal complexes: X:H.169, V:H.169, F:H.169, G:H.169 FE.4: 6 residues within 4Å: Chain I: L.165, H.169 Chain K: H.169 Chain O: H.169 Chain W: L.165, H.169 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain O, 1 interactions with chain W, 1 interactions with chain K Metal complexes: I:H.169, O:H.169, W:H.169, K:H.169 FE.5: 6 residues within 4Å: Chain J: H.169 Chain L: H.169 Chain P: L.165, H.169 Chain Q: L.165, H.169 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain P, 1 interactions with chain Q, 1 interactions with chain J Metal complexes: L:H.169, P:H.169, Q:H.169, J:H.169 FE.6: 6 residues within 4Å: Chain R: H.169 Chain S: L.165, H.169 Chain T: L.165, H.169 Chain U: H.169 4 PLIP interactions: 1 interactions with chain U, 1 interactions with chain S, 1 interactions with chain T, 1 interactions with chain R Metal complexes: U:H.169, S:H.169, T:H.169, R:H.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, R. et al., Characterizing the resolution and throughput of the Apollo direct electron detector. J Struct Biol X (2023)

Release Date

2022-12-21

Peptides

Ferritin heavy chain, N-terminally processed: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferritin heavy chain, N-terminally processed

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