SMTL ID : 8ens.1

Crystal structure of beta'-COPI-WD40 domain in complex with SARS-CoV-2 spike tail hepta-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x VAL- LYS- LEU- HIS- TYR- THR: spike tail hepta-peptide(Non-covalent)

VAL-LYS-LEU-HIS-TYR-THR.1: 16 residues within 4Å: Chain A: R.16, K.18, Y.34, R.60, D.99, Y.100, R.102, D.118, H.142, F.143, M.145, L.162, N.189, D.207, R.273, W.275 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.100, A:F.143 Hydrogen bonds: A:Y.34, A:R.60, A:R.60, A:R.102, A:R.102, A:D.118, A:D.118 Water bridges: A:K.18, A:N.231, A:E.249 Salt bridges: A:R.16, A:K.18, A:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dey, D. et al., A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs. Nat Commun (2023)

Release Date

2024-01-31

Peptides

Coatomer subunit beta': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coatomer subunit beta'

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