SMTL ID : 8eoo.2 (1 other biounit)

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing human antibodies WRAIR-2063 and WRAIR-2151

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: F.12, N.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.12 Hydrogen bonds: A:N.13

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.98, F.99, T.100, S.184, F.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.98, A:T.100, A:T.100, A:F.185 GOL.3: 2 residues within 4Å: Chain C: H.171, T.172 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.172 GOL.4: 9 residues within 4Å: Chain C: G.44, K.45, G.46 Chain E: D.88, Y.90, G.103, G.104, T.105, K.106 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:D.88, E:Y.90, E:G.104, C:G.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jensen, J.L. et al., Targeting the Spike Receptor Binding Domain Class V Cryptic Epitope by an Antibody with Pan-Sarbecovirus Activity. J.Virol. (2023)

Release Date

2023-06-14

Peptides

Spike protein S1: A
WRAIR-2063 antibody Fab heavy chain: B
WRAIR-2151 antibody Fab heavy chain: C
WRAIR-2063 antibody Fab light chain: D
WRAIR-2151 antibody Fab light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
J

E
K

Spike protein S1

WRAIR-2063 antibody Fab heavy chain

WRAIR-2151 antibody Fab heavy chain

WRAIR-2063 antibody Fab light chain

WRAIR-2151 antibody Fab light chain

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