SMTL ID : 8eqz.1

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-C6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

2 x WQB: N-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)phenyl]-N-hexylbenzenesulfonamide(Non-covalent)

WQB.1: 17 residues within 4Å: Chain A: D.87, L.91, L.122, M.125, A.126, M.128, S.129, Q.167, F.170, W.181, Y.188, M.205, H.289, R.292, L.293, F.302, M.307 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.91 Hydrogen bonds: A:Q.167 pi-Stacking: A:F.170, A:Y.188 Halogen bonds: A:S.129 WQB.2: 15 residues within 4Å: Chain B: L.91, V.93, L.122, M.125, S.129, F.163, Q.167, F.170, W.181, Y.188, M.205, H.209, H.289, L.293, F.302 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.91, B:L.91, B:V.93, B:F.163, B:W.181, B:Y.188 Hydrogen bonds: B:Q.167 pi-Stacking: B:F.170, B:W.181, B:Y.188 Halogen bonds: B:M.125, B:S.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, W. et al., Structure-guided approach to modulate small molecule binding to a promiscuous ligand-activated protein. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-03-15

Peptides

Nuclear receptor subfamily 1 group I member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group I member 2