SMTL ID : 8erb.1 (7 other biounits)

Crystal structure of Fub7 in complex with vinylglycine ketimine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x WBJ: (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]but-3-enoic acid(Non-covalent)

WBJ.1: 20 residues within 4Å: Chain A: S.87, G.88, Q.89, Q.92, Y.113, E.156, N.160, D.185, T.187, S.208, T.210, K.211, G.221, A.372, N.373, V.374, T.388, R.408 Chain B: Y.58, R.60 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.113, A:Y.113, B:Y.58 Hydrogen bonds: A:G.88, A:Q.89, A:Q.92, A:N.160, A:S.208, A:S.208, A:S.208, A:K.211, B:Y.58 Water bridges: A:T.116, A:T.187 Salt bridges: A:K.211, A:K.211, A:R.408, B:R.60 WBJ.2: 20 residues within 4Å: Chain A: Y.58, R.60 Chain B: S.87, G.88, Q.89, Q.92, Y.113, E.156, N.160, D.185, T.187, S.208, T.210, K.211, G.221, A.372, N.373, V.374, T.388, R.408 18 PLIP interactions: 3 interactions with chain A, 15 interactions with chain B Hydrophobic interactions: A:Y.58, B:Y.113, B:Y.113 Hydrogen bonds: A:Y.58, B:G.88, B:Q.89, B:Q.92, B:N.160, B:T.187, B:S.208, B:S.208, B:S.208, B:T.210, B:K.211 Salt bridges: A:R.60, B:K.211, B:K.211, B:R.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Molecular and Structural Basis for C gamma-C Bond Formation by PLP-Dependent Enzyme Fub7. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2023-10-18

Peptides

Sulfhydrylase FUB7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Sulfhydrylase FUB7

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