SMTL ID : 8erg.1

HTLV-1 capsid protein N-terminal domain hexagonal crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:L.55, A:Q.56, A:Y.113, A:W.117 Water bridges: A:Q.56, A:R.98 Salt bridges: A:H.71, A:H.72, A:R.98 SO4.2: 9 residues within 4Å: Chain B: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:L.55, B:Q.56, B:Y.113, B:W.117 Water bridges: B:Q.56, B:R.98 Salt bridges: B:H.71, B:H.72, B:R.98 SO4.3: 9 residues within 4Å: Chain C: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:L.55, C:Q.56, C:Y.113, C:W.117 Water bridges: C:Q.56, C:R.98 Salt bridges: C:H.71, C:H.72, C:R.98 SO4.4: 9 residues within 4Å: Chain D: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:L.55, D:Q.56, D:Y.113, D:W.117 Water bridges: D:Q.56, D:R.98 Salt bridges: D:H.71, D:H.72, D:R.98 SO4.5: 9 residues within 4Å: Chain E: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:L.55, E:Q.56, E:Y.113, E:W.117 Water bridges: E:Q.56, E:R.98 Salt bridges: E:H.71, E:H.72, E:R.98 SO4.6: 9 residues within 4Å: Chain F: L.55, Q.56, L.59, H.71, H.72, L.75, R.98, Y.113, W.117 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:L.55, F:Q.56, F:Y.113, F:W.117 Water bridges: F:Q.56, F:R.98 Salt bridges: F:H.71, F:H.72, F:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, R.J. et al., HTLV-1 capsid protein N-terminal domain hexagonal crystal form. To Be Published

Release Date

2023-10-18

Peptides

capsid protein p24: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

capsid protein p24

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