SMTL ID : 8erq.1

SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: N.340, V.364, L.368 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.340, C:V.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, Y.J. et al., Imprinted antibody responses against SARS-CoV-2 Omicron sublineages. Science (2022)

Release Date

2022-10-26

Peptides

S2X324 Fab heavy chain: A
S2X324 Fab light chain: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

S2X324 Fab heavy chain

S2X324 Fab light chain

Spike glycoprotein

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