SMTL ID : 8etd.1

Crystal Structure of Schizosaccharomyces pombe Rho1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.20, T.38 Ligands: GDP.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.38, H2O.1, H2O.1 MG.3: 4 residues within 4Å: Chain B: T.20, T.38, T.61 Ligands: GDP.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.20, B:T.38, H2O.3, H2O.3

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: D.14, G.15, A.16, C.17, G.18, K.19, T.20, C.21, F.31, V.36, K.119, D.121, L.122, S.161, A.162, K.163 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:D.14, A:A.16, A:C.17, A:G.18, A:K.19, A:T.20, A:T.20, A:C.21, A:T.38, A:K.119, A:A.162, A:K.163 Water bridges: A:K.19, A:L.22 Salt bridges: A:K.19, A:D.121 pi-Stacking: A:F.31 GDP.4: 17 residues within 4Å: Chain B: D.14, G.15, A.16, C.17, G.18, K.19, T.20, C.21, F.31, V.36, K.119, D.121, L.122, S.161, A.162, K.163 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:A.16, B:C.17, B:G.18, B:K.19, B:T.20, B:C.21, B:K.119, B:K.119, B:A.162, B:K.163, B:K.163 Water bridges: B:K.19, B:T.20, B:P.37, B:T.61, B:K.119 Salt bridges: B:K.19, B:D.121 pi-Stacking: B:F.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal Structure of Schizosaccharomyces pombe Rho1 Reveals Its Evolutionary Relationship with Other Rho GTPases. Biology (Basel) (2022)

Release Date

2022-12-07

Peptides

GTP-binding protein rho1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding protein rho1