SMTL ID : 8etu.1

Class2 of the INO80-Hexasome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-3-3-1-1-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 17 residues within 4Å: Chain C: A.6, H.7, H.9, G.27, F.28, V.29, G.60, S.62, T.63, G.64, K.65, T.66, A.67, Y.355, I.363, R.393 Chain D: R.297 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:A.6, C:H.7, C:V.29, C:S.62, C:T.63, C:G.64, C:K.65, C:T.66, C:T.66, C:T.66, C:A.67, C:Y.355, C:Y.355 Salt bridges: C:K.65, C:R.393, C:R.393, D:R.297, D:R.297 ADP.2: 18 residues within 4Å: Chain D: A.8, H.9, H.11, I.12, G.29, M.30, V.31, P.63, S.64, T.65, G.66, K.67, T.68, A.69, Y.345, I.353, L.382, R.383 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:H.9, D:V.31, D:S.64, D:T.65, D:G.66, D:K.67, D:T.68, D:A.69, D:Y.345, D:Y.345 Salt bridges: D:H.9, D:K.67, D:R.383, D:R.383 ADP.3: 19 residues within 4Å: Chain E: A.6, H.9, G.27, F.28, V.29, G.60, P.61, S.62, T.63, G.64, K.65, T.66, A.67, Y.355, I.363, L.392, R.393 Chain F: R.297, E.300 18 PLIP interactions: 16 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:A.6, E:V.29, E:S.62, E:T.63, E:T.63, E:G.64, E:K.65, E:T.66, E:T.66, E:T.66, E:A.67, E:Y.355, E:Y.355 Salt bridges: E:K.65, E:R.393, E:R.393, F:R.297, F:R.297 ADP.4: 20 residues within 4Å: Chain F: A.8, H.9, H.11, I.12, G.29, M.30, V.31, P.62, P.63, S.64, T.65, G.66, K.67, T.68, A.69, Y.345, I.353, L.382, R.383 Chain G: E.309 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:H.9, F:V.31, F:P.62, F:S.64, F:T.65, F:G.66, F:K.67, F:T.68, F:T.68, F:T.68, F:A.69, F:Y.345, F:Y.345 Salt bridges: F:H.9, F:K.67, F:R.383 ADP.5: 18 residues within 4Å: Chain G: A.6, H.7, H.9, G.27, F.28, V.29, G.60, S.62, T.63, G.64, K.65, T.66, A.67, Y.355, I.363, R.393 Chain H: R.297, R.336 17 PLIP interactions: 14 interactions with chain G, 3 interactions with chain H Hydrogen bonds: G:H.7, G:V.29, G:S.62, G:T.63, G:G.64, G:K.65, G:T.66, G:T.66, G:A.67, G:Y.355, G:Y.355, H:R.336 Salt bridges: G:K.65, G:R.393, G:R.393, H:R.297, H:R.297 ADP.6: 17 residues within 4Å: Chain H: A.8, H.9, H.11, G.29, M.30, V.31, P.62, S.64, T.65, G.66, K.67, T.68, A.69, Y.345, I.353, L.382, R.383 13 PLIP interactions: 13 interactions with chain H Hydrogen bonds: H:A.8, H:V.31, H:S.64, H:T.65, H:G.66, H:K.67, H:T.68, H:A.69, H:Y.345, H:Y.345 Salt bridges: H:K.67, H:R.383, H:R.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science (2023)

Release Date

2023-07-19

Peptides

Actin-related protein 5: A
Chromatin-remodeling complex subunit IES6: B
RuvB-like protein 1: CEG
RuvB-like protein 2: DFH
Chromatin-remodeling ATPase INO80: I
Ino eighty subunit 2: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
S

C
T

E
V

G
X

D
U

F
W

H
Y

I
Q

J
Z

Actin-related protein 5

Chromatin-remodeling complex subunit IES6

RuvB-like protein 1

RuvB-like protein 2

Chromatin-remodeling ATPase INO80

Ino eighty subunit 2

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