SMTL ID : 8ety.1

Ancestral PETase 35_442

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: R.54, A.57, F.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.60, A:F.60 Water bridges: A:G.59

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: M.126, N.130, S.144, L.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.130 PEG.3: 3 residues within 4Å: Chain A: S.58, N.134, R.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.58, A:S.58, A:R.135 Water bridges: A:R.135

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: T.70, T.71, S.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.70, A:T.70 EDO.7: 1 residues within 4Å: Ligands: GOL.6 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: S.237, N.238, T.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.239, A:T.239 EDO.9: 3 residues within 4Å: Chain A: S.205, K.209, P.210 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.209 EDO.11: 2 residues within 4Å: Chain A: T.75, D.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.143 Water bridges: A:T.75, A:S.144 EDO.12: 5 residues within 4Å: Chain A: N.213, S.214, L.215, S.217, K.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.221, A:K.221 Water bridges: A:S.217 EDO.13: 5 residues within 4Å: Chain A: R.146, K.170, F.252, V.253, N.255 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.170, A:V.253, A:N.255 Water bridges: A:F.252, A:N.255, A:N.255 EDO.14: 2 residues within 4Å: Chain A: G.30, P.31 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.32, A:R.258

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 10 residues within 4Å: Chain A: G.84, Y.85, A.87, H.152, S.153, W.178, I.201, H.231, F.232, N.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.153 Water bridges: A:T.86

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: R.251, T.257 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.251 Water bridges: A:R.251

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 7 residues within 4Å: Chain A: N.198, D.199, T.200, I.201, S.230, H.231, F.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.199, A:T.200, A:I.201, A:H.231, A:F.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vongsouthi, V. et al., Ancestral reconstruction of polyethylene terephthalate degrading cutinases reveals a rugged and unexplored sequence-fitness landscape. Sci Adv (2025)

Release Date

2023-11-01

Peptides

Polyethylene terephthalate hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyethylene terephthalate hydrolase