SMTL ID : 8etz.1

Ancestral PETase 35_442 Mutant E13D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: M.125, L.128, N.129, V.132, S.143, L.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.129 PEG.12: 6 residues within 4Å: Chain A: P.264, A.265, P.266, D.268, D.269 Ligands: GOL.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.269

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 14 residues within 4Å: Chain A: G.83, Y.84, T.85, A.86, S.90, Q.116, H.151, S.152, M.153, W.177, I.200, H.230, F.231, N.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.116, A:Q.116, A:S.152 Water bridges: A:T.85

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: P.25, Y.26, R.28, E.72, G.73, T.74, R.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.25, A:R.28 EDO.4: 4 residues within 4Å: Chain A: T.68, T.69, T.70, S.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.70, A:T.70 EDO.5: 6 residues within 4Å: Chain A: P.189, P.219, R.250, F.251, N.254 Ligands: EDO.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.250, A:R.250, A:N.254 EDO.6: 5 residues within 4Å: Chain A: G.58, N.111, S.119, R.122, Q.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.122, A:R.122 Water bridges: A:S.119 EDO.7: 5 residues within 4Å: Chain A: E.196, N.197, D.198, T.199, P.202 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.198 EDO.8: 7 residues within 4Å: Chain A: E.48, T.63, Y.65, Q.88, S.89, A.92, T.107 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.63, A:Y.65, A:Q.88 EDO.10: 4 residues within 4Å: Chain A: R.250, N.254, T.256 Ligands: EDO.5 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 8 residues within 4Å: Chain A: D.34, K.242, Q.260, F.261, P.264, A.265, D.268 Ligands: PEG.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.34, A:Q.260, A:D.268 Water bridges: A:D.34

1 x NA: SODIUM ION(Non-functional Binders)

NA.11: 5 residues within 4Å: Chain A: H.267, D.269, S.270, I.272, S.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.267, A:I.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saunders, J. et al., Ancestral PETase 35_442 Mutant E13D. To Be Published

Release Date

2023-11-01

Peptides

Polyethylene terephthalate hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyethylene terephthalate hydrolase