SMTL ID : 8euk.1

cytochrome P450terp (cyp108A1) bound to ethylene glycol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 30 residues within 4Å: Chain A: L.122, T.123, H.130, R.134, V.186, I.284, A.287, G.288, T.291, T.292, S.295, V.328, P.333, V.334, F.337, R.339, Y.362, G.389, F.390, G.391, W.392, H.395, M.396, C.397, L.398, G.399, L.402, A.403, E.406 Ligands: EDO.12 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:L.122, A:T.123, A:V.186, A:A.287, A:T.291, A:V.328, A:V.328, A:P.333, A:V.334, A:V.334, A:F.337, A:F.390, A:L.398, A:L.402 Hydrogen bonds: A:Y.362, A:W.392 Water bridges: A:R.339, A:R.339, A:R.339, A:H.395 Salt bridges: A:H.130, A:R.134, A:R.339, A:H.395 Metal complexes: A:C.397

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.44, I.301, W.330, L.429 6 PLIP interactions: 6 interactions with chain A Water bridges: A:D.44, A:D.44, A:D.44, A:D.44, A:R.305, A:W.330 EDO.3: 7 residues within 4Å: Chain A: E.97, I.98, M.108, H.117, V.118, I.119, S.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.97, A:V.118 Water bridges: A:E.97 EDO.4: 2 residues within 4Å: Chain A: Y.242, G.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.245 EDO.5: 5 residues within 4Å: Chain A: N.244, T.247, V.248, R.251, D.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.251 Water bridges: A:R.251, A:D.274 EDO.6: 5 residues within 4Å: Chain A: D.44, E.45, Y.48, P.49, D.376 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.376 Water bridges: A:D.44, A:R.367 EDO.7: 6 residues within 4Å: Chain A: D.325, H.387, F.390, M.396, Q.400, K.404 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.325, A:K.404 Water bridges: A:Q.400, A:K.404 EDO.8: 3 residues within 4Å: Chain A: S.304, E.422, L.423 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.304, A:L.423 EDO.9: 7 residues within 4Å: Chain A: Q.82, Q.86, L.89, F.90, T.345, E.346, V.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.82, A:Q.86, A:E.346 EDO.10: 3 residues within 4Å: Chain A: C.171, D.172, P.442 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.171, A:D.172 Water bridges: A:I.443 EDO.11: 5 residues within 4Å: Chain A: T.204, F.208, T.286, D.290, V.435 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.290, A:D.290, A:D.290, A:V.435 EDO.12: 5 residues within 4Å: Chain A: A.287, T.291, V.334, F.337 Ligands: HEM.1 No protein-ligand interaction detected (PLIP) EDO.13: 2 residues within 4Å: Chain A: G.245, D.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gable, J.A. et al., Cooperative Substrate Binding Controls Catalysis in Bacterial Cytochrome P450terp (CYP108A1). J.Am.Chem.Soc. (2023)

Release Date

2023-02-22

Peptides

Cytochrome P450-terp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450-terp

Related Entries With Identical Sequence