SMTL ID : 8evn.1

Sulfatase from Mycobacterium tuberculosis (Rv3406) in complex with N-oxalylglycine (NOG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-tetramer

Ligands

4 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 10 residues within 4Å: Chain A: H.101, D.103, L.116, T.128, W.248, H.255, A.257, R.266, R.270 Ligands: NI.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.128 Salt bridges: A:H.255, A:R.266, A:R.270 OGA.3: 10 residues within 4Å: Chain B: H.101, D.103, L.116, T.128, W.248, H.255, A.257, R.266, R.270 Ligands: NI.4 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.255, B:R.266, B:R.270 OGA.5: 9 residues within 4Å: Chain C: H.101, D.103, L.116, T.128, W.248, H.255, A.257, R.266 Ligands: NI.6 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.128 Salt bridges: C:H.255, C:R.266 OGA.7: 10 residues within 4Å: Chain D: A.97, H.101, D.103, L.116, T.128, W.248, H.255, A.257, R.266 Ligands: NI.9 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:H.255, D:R.266

4 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.101, D.103, H.255 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.101, A:D.103, A:H.255, H2O.1 NI.4: 4 residues within 4Å: Chain B: H.101, D.103, H.255 Ligands: OGA.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.101, B:D.103, B:H.255 NI.6: 4 residues within 4Å: Chain C: H.101, D.103, H.255 Ligands: OGA.5 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.101, C:D.103, C:H.255 NI.9: 4 residues within 4Å: Chain D: H.101, D.103, H.255 Ligands: OGA.7 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.101, D:D.103, D:H.255

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.8: 3 residues within 4Å: Chain D: E.142, E.149, R.199 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.142, D:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Juan, T.-J. et al., Sulfatase from Mycobacterium tuberculosis (Rv3406) in complex with inhibitors NOG and FG2216. To Be Published

Release Date

2023-10-25

Peptides

Alpha-ketoglutarate-dependent sulfate ester dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alpha-ketoglutarate-dependent sulfate ester dioxygenase

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