- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DAL: D-ALANINE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: K.114, E.280, N.282
- Ligands: MG.5, ATP.6
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.280, A:E.280, H2O.3
MG.5: 6 residues within 4Å:- Chain A: R.265, D.267, E.280, N.282
- Ligands: MG.4, ATP.6
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.267, A:E.280, H2O.2
MG.9: 4 residues within 4Å:- Chain B: E.280, N.282
- Ligands: MG.10, ATP.11
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.280, B:E.280, H2O.5
MG.10: 6 residues within 4Å:- Chain B: R.265, D.267, E.280, N.282
- Ligands: MG.9, ATP.11
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.267, B:E.280, H2O.4
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.6: 27 residues within 4Å:- Chain A: K.114, P.129, I.152, K.154, E.158, G.159, S.160, S.161, M.164, E.190, Q.191, W.192, I.193, E.197, F.219, Y.220, K.225, R.265, D.267, M.269, L.279, E.280, N.282
- Ligands: DAL.1, DAL.2, MG.4, MG.5
21 PLIP interactions:21 interactions with chain A- Hydrogen bonds: A:K.154, A:G.159, A:S.160, A:S.161, A:E.190, A:I.193, A:E.197, A:Y.220, A:N.282
- Water bridges: A:K.114, A:E.197, A:K.225, A:K.225, A:D.267
- Salt bridges: A:K.114, A:K.114, A:K.154, A:K.225, A:K.225, A:K.225, A:R.265
ATP.11: 26 residues within 4Å:- Chain B: K.114, P.129, I.152, K.154, E.158, G.159, S.160, S.161, M.164, E.190, Q.191, W.192, I.193, E.197, F.219, Y.220, K.225, R.265, D.267, L.279, E.280, N.282
- Ligands: DAL.7, DAL.8, MG.9, MG.10
23 PLIP interactions:23 interactions with chain B- Hydrogen bonds: B:K.154, B:G.159, B:S.160, B:S.161, B:E.190, B:E.190, B:I.193, B:E.197, B:Y.220, B:D.267, B:N.282
- Water bridges: B:K.114, B:I.162, B:E.197, B:K.225, B:K.225
- Salt bridges: B:K.114, B:K.114, B:K.154, B:K.225, B:K.225, B:K.225, B:R.265
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pederick, J.L. et al., Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J. (2023)
- Release Date
- 2023-08-30
- Peptides
- D-alanine--D-alanine ligase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x DAL: D-ALANINE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pederick, J.L. et al., Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J. (2023)
- Release Date
- 2023-08-30
- Peptides
- D-alanine--D-alanine ligase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C