SMTL ID : 8ewi.1

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.1179, S.1180, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1179, A:C.1208, A:C.1211, A:C.1232 ZN.2: 5 residues within 4Å: Chain A: C.1211, C.1215, C.1234, C.1240, T.1242 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1211, A:C.1215, A:C.1234, A:C.1240 ZN.3: 5 residues within 4Å: Chain A: C.1196, T.1198, C.1199, H.1216, H.1219 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.1196, A:T.1198, A:C.1199, A:H.1216, A:H.1219 ZN.4: 5 residues within 4Å: Chain B: C.1179, S.1180, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1179, B:C.1208, B:C.1211, B:C.1232 ZN.5: 5 residues within 4Å: Chain B: C.1211, C.1215, C.1234, C.1240, T.1242 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1211, B:C.1215, B:C.1234, B:C.1240 ZN.6: 5 residues within 4Å: Chain B: C.1196, T.1198, C.1199, H.1216, H.1219 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1196, B:C.1199, B:H.1216, B:H.1219 ZN.7: 5 residues within 4Å: Chain C: C.1179, S.1180, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1179, C:C.1208, C:C.1211, C:C.1232 ZN.8: 5 residues within 4Å: Chain C: C.1211, C.1215, C.1234, C.1240, T.1242 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1211, C:C.1215, C:C.1234, C:C.1240 ZN.9: 4 residues within 4Å: Chain C: C.1196, C.1199, H.1216, H.1219 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.1196, C:C.1199, C:H.1216, C:H.1219 ZN.10: 5 residues within 4Å: Chain D: C.1179, S.1180, C.1208, C.1211, C.1232 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.1179, D:C.1208, D:C.1211, D:C.1232 ZN.11: 5 residues within 4Å: Chain D: C.1211, C.1215, C.1234, C.1240, T.1242 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.1211, D:C.1215, D:C.1234, D:C.1240 ZN.12: 5 residues within 4Å: Chain D: C.1196, T.1198, C.1199, H.1216, H.1219 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.1196, D:C.1199, D:H.1216, D:H.1219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of the human UBR5 E3 ubiquitin ligase. Structure (2023)

Release Date

2023-04-19

Peptides

E3 ubiquitin-protein ligase UBR5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase UBR5