SMTL ID : 8ey0.1

Structure of an orthogonal PYR1*:HAB1* chemical-induced dimerization module in complex with mandipropamid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.213, R.215, Y.226, L.227, Y.230 Chain B: D.162 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.162, A:R.215 GOL.2: 2 residues within 4Å: Chain B: T.22, Y.23 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.21, B:Y.23

1 x 3UZ: (2S)-2-(4-chlorophenyl)-N-{2-[3-methoxy-4-(prop-2-yn-1-yloxy)phenyl]ethyl}-2-(prop-2-yn-1-yloxy)ethanamide(Non-covalent)

3UZ.3: 17 residues within 4Å: Chain A: G.214 Chain B: R.59, F.61, R.79, I.81, P.88, A.89, S.92, E.94, A.108, I.110, H.115, L.117, Y.120, V.160, V.163, N.167 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.61, B:I.81, B:P.88, B:E.94, B:A.108, B:L.117, B:Y.120, B:V.163, B:V.163 Hydrogen bonds: B:R.59, B:E.94, B:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.Y. et al., An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity. Nat.Chem.Biol. (2024)

Release Date

2023-11-08

Peptides

Protein phosphatase 2C 16: A
Abscisic acid receptor PYR1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protein phosphatase 2C 16

Abscisic acid receptor PYR1