SMTL ID : 8eyi.1

Atomic model of the core modifying region of human fatty acid synthase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 22 residues within 4Å: Chain A: F.720, T.801, S.822, S.824, G.825, G.826, V.827, V.846, G.847, K.851, S.870, R.871, S.894, I.916, K.918, V.941, L.942, L.943, D.944, A.991, G.993, H.995 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.801, A:V.827 Hydrogen bonds: A:S.822, A:S.822, A:G.826, A:V.827, A:G.847, A:S.870, A:I.916, A:L.943, A:A.991, A:K.998, A:K.998 Salt bridges: A:K.851, A:R.871, A:H.995 NDP.2: 27 residues within 4Å: Chain A: G.1038, G.1041, G.1042, F.1043, T.1062, S.1063, R.1064, S.1065, R.1068, N.1092, S.1094, L.1118, A.1119, V.1120, V.1121, P.1141, K.1142, F.1166, S.1167, S.1168, Y.1181, W.1207, G.1208, I.1210, G.1214, I.1215, L.1216 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.1207, A:I.1210 Hydrogen bonds: A:G.1038, A:G.1042, A:F.1043, A:R.1064, A:S.1065, A:R.1068, A:N.1092, A:N.1092, A:L.1118, A:V.1120, A:K.1142, A:K.1142, A:Y.1181, A:I.1210, A:I.1215 Salt bridges: A:R.1064 pi-Cation interactions: A:R.1064 NDP.3: 25 residues within 4Å: Chain B: F.720, V.797, T.801, S.822, S.824, G.825, G.826, V.827, V.846, G.847, K.851, S.870, R.871, S.894, I.916, G.917, K.918, V.941, L.942, L.943, M.990, A.991, G.993, H.995, G.997 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.797, B:T.801, B:I.916 Hydrogen bonds: B:S.822, B:S.822, B:S.824, B:G.826, B:V.827, B:G.847, B:S.870, B:I.916, B:K.918, B:L.943, B:A.991, B:G.997 Salt bridges: B:K.851, B:R.871, B:H.995 NDP.4: 26 residues within 4Å: Chain B: G.1038, G.1041, G.1042, F.1043, T.1062, S.1063, R.1064, S.1065, R.1068, N.1092, L.1118, A.1119, V.1120, V.1121, P.1141, K.1142, F.1166, S.1167, S.1168, Y.1181, W.1207, G.1208, I.1210, G.1214, I.1215, L.1216 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:W.1207, B:I.1210 Hydrogen bonds: B:G.1038, B:G.1042, B:F.1043, B:R.1064, B:S.1065, B:N.1092, B:N.1092, B:L.1118, B:V.1120, B:K.1142, B:Y.1181, B:I.1210 Salt bridges: B:R.1064, B:R.1068

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hasan, S.M.N. et al., Atomic model for core modifying region of human fatty acid synthase in complex with Denifanstat. Nat Commun (2023)

Release Date

2023-05-24

Peptides

Fatty acid synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Fatty acid synthase

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