SMTL ID : 8f12.1

Structure of the MDM2 P53 binding domain in complex with H103, an all-D Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.54, Q.55, Q.56, H.57 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.54, A:Q.56 Water bridges: A:H.57, A:H.57, A:H.57 Salt bridges: A:H.57 SO4.2: 2 residues within 4Å: Chain A: P.4, A.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: S.24 Ligand excluded by PLIP

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.4: 5 residues within 4Å: Chain A: K.35 Chain B: C.8, A.11, A.12, C.15 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.35 Hydrogen bonds: A:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Callahan, A.J. et al., Single-Shot Flow Synthesis of D-Proteins for Mirror-Image Phage Display. Chemrxiv (2023)

Release Date

2023-02-15

Peptides

E3 ubiquitin-protein ligase Mdm2: A
H103: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase Mdm2

H103

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