SMTL ID : 8f2e.1

Crystal Structure of the CoV-Y domain of SARS-CoV-2 Nonstructural Protein 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: H.40, I.62, Q.184, S.185, R.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.40, A:R.254 Water bridges: A:R.39, A:R.39 GOL.2: 5 residues within 4Å: Chain A: K.21, N.22, S.24, H.26, R.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.22, A:H.26 GOL.3: 2 residues within 4Å: Chain A: D.192, S.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.192, A:D.192, A:S.193 GOL.4: 2 residues within 4Å: Chain A: Y.84 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) GOL.5: 7 residues within 4Å: Chain A: L.181, S.185, I.187, F.242, E.247, R.250, R.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.185, A:R.250, A:R.254, A:R.254 GOL.6: 4 residues within 4Å: Chain A: A.53, N.54, G.58 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structure of the CoV-Y domain of SARS-CoV-2 nonstructural protein 3. Sci Rep (2023)

Release Date

2023-03-08

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3