- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x XG0: 4-[(4-chlorophenyl)methyl]-2-[(4S)-1-methylazepan-4-yl]phthalazin-1(2H)-one(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 6 residues within 4Å:- Chain A: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.3: 9 residues within 4Å:- Chain A: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.1
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain A: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain B: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.11: 9 residues within 4Å:- Chain B: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.9
Ligand excluded by PLIPGOL.12: 5 residues within 4Å:- Chain B: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain B: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain C: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.19: 9 residues within 4Å:- Chain C: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.17
Ligand excluded by PLIPGOL.20: 5 residues within 4Å:- Chain C: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain C: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIPGOL.26: 6 residues within 4Å:- Chain D: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.27: 9 residues within 4Å:- Chain D: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.25
Ligand excluded by PLIPGOL.28: 5 residues within 4Å:- Chain D: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain D: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain E: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.35: 9 residues within 4Å:- Chain E: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.33
Ligand excluded by PLIPGOL.36: 5 residues within 4Å:- Chain E: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.38: 6 residues within 4Å:- Chain E: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIPGOL.42: 6 residues within 4Å:- Chain F: W.33, R.57, V.60, P.61, T.62, A.65
Ligand excluded by PLIPGOL.43: 9 residues within 4Å:- Chain F: L.102, S.103, F.104, V.105, H.139, A.140, S.141, Y.146
- Ligands: XG0.41
Ligand excluded by PLIPGOL.44: 5 residues within 4Å:- Chain F: R.262, I.288, T.418, A.419, E.421
Ligand excluded by PLIPGOL.46: 6 residues within 4Å:- Chain F: H.125, R.126, A.129, R.317, M.319, R.373
Ligand excluded by PLIP- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 9 residues within 4Å:- Chain A: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.288, A:T.289
- Water bridges: A:Q.417
PEG.13: 9 residues within 4Å:- Chain B: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.288, B:T.289
- Water bridges: B:Q.417
PEG.21: 9 residues within 4Å:- Chain C: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.288, C:T.289
- Water bridges: C:Q.417
PEG.29: 9 residues within 4Å:- Chain D: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.288
- Water bridges: D:Q.417
PEG.37: 9 residues within 4Å:- Chain E: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:I.288
- Water bridges: E:Q.417
PEG.45: 9 residues within 4Å:- Chain F: L.261, H.269, I.287, I.288, T.289, H.290, D.293, P.294, Q.417
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:I.288
- Water bridges: F:Q.417
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.7: 7 residues within 4Å:- Chain A: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.93
- Water bridges: A:E.94
DMS.15: 7 residues within 4Å:- Chain B: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.93
- Water bridges: B:E.94
DMS.23: 7 residues within 4Å:- Chain C: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.93
- Water bridges: C:E.94
DMS.31: 7 residues within 4Å:- Chain D: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.93
- Water bridges: D:E.94, D:D.413
DMS.39: 7 residues within 4Å:- Chain E: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.93
- Water bridges: E:E.94, E:D.413
DMS.47: 7 residues within 4Å:- Chain F: P.92, G.93, R.328, G.329, Y.330, A.411, D.413
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:G.93
- Water bridges: F:E.94, F:D.413
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 6 residues within 4Å:- Chain A: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.113, A:R.114, A:G.115, A:L.116, A:L.117, A:R.118
SO4.16: 6 residues within 4Å:- Chain B: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.113, B:R.114, B:G.115, B:L.116, B:L.117, B:R.118
SO4.24: 6 residues within 4Å:- Chain C: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.113, C:R.114, C:G.115, C:L.116, C:L.117, C:R.118
SO4.32: 6 residues within 4Å:- Chain D: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.113, D:R.114, D:G.115, D:L.116, D:L.117, D:R.118
SO4.40: 6 residues within 4Å:- Chain E: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:R.113, E:R.114, E:G.115, E:L.116, E:L.117, E:R.118
SO4.48: 6 residues within 4Å:- Chain F: R.113, R.114, G.115, L.116, L.117, R.118
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:R.113, F:R.114, F:G.115, F:L.116, F:L.117, F:R.118
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pang, A.H. et al., Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry (2023)
- Release Date
- 2023-02-08
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x XG0: 4-[(4-chlorophenyl)methyl]-2-[(4S)-1-methylazepan-4-yl]phthalazin-1(2H)-one(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- 6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pang, A.H. et al., Discovery and Mechanistic Analysis of Structurally Diverse Inhibitors of Acetyltransferase Eis among FDA-Approved Drugs. Biochemistry (2023)
- Release Date
- 2023-02-08
- Peptides
- N-acetyltransferase Eis: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A