SMTL ID : 8f5i.1

SARS-CoV-2 S2 helix epitope scaffold bound by antibody DH1057.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 3 residues within 4Å: Chain C: N.73, S.75, A.76 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.75

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 3 residues within 4Å: Chain E: N.73, S.75, A.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kapingidza, A.B. et al., Engineered immunogens to elicit antibodies against conserved coronavirus epitopes. Nat Commun (2023)

Release Date

2023-10-11

Peptides

Specialized acyl carrier protein: AB
DH1057.1 HC: CE
DH1057.1 LC: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

E
X

D
L

F
Y

Specialized acyl carrier protein

DH1057.1 HC

DH1057.1 LC