SMTL ID : 8f6f.1

Cryo-EM structure of a Zinc-loaded D51A mutant of the YiiP-Fab complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.234, H.250, D.287 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.234, A:H.250, A:D.287 ZN.2: 5 residues within 4Å: Chain A: Y.64, D.70, D.72, H.73, H.77 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.70, A:H.73, A:H.77 ZN.3: 3 residues within 4Å: Chain A: H.285, D.287 Chain D: H.263 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Metal complexes: A:H.285, A:D.287, D:H.263 ZN.4: 3 residues within 4Å: Chain A: H.263 Chain D: H.285, D.287 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Metal complexes: A:H.263, D:H.285, D:D.287 ZN.5: 3 residues within 4Å: Chain D: H.234, H.250, D.287 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.234, D:H.250, D:D.287 ZN.6: 5 residues within 4Å: Chain D: Y.64, D.70, D.72, H.73, H.77 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.70, D:D.70, D:H.73, D:H.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Redondo, M.L. et al., Characterization of individual Zn2+ binding sites of YiiP. To Be Published

Release Date

2023-02-08

Peptides

Cadmium and zinc efflux pump FieF: AD
Fab2r light chain: BE
Fab2r heavy chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

E
E

C
D

F
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Cadmium and zinc efflux pump FieF

Fab2r light chain

Fab2r heavy chain

Related Entries With Identical Sequence