SMTL ID : 8f73.2 (1 other biounit)

Crystal structure of Pseudomonas aeruginosa UDP-glucose phosphorylase in complex with UDP-glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 29 residues within 4Å: Chain A: P.14, A.15, A.16, G.17, K.31, E.32, Q.108, M.111, K.112, G.113, L.114, A.117, L.134, A.135, D.136, D.137, Y.176, G.177, E.196, K.197, I.209, I.210, G.211, Y.213, E.233, Q.235, T.237, R.258 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.16, A:G.17, A:Q.108, A:Q.108, A:G.113, A:G.177, A:I.209, A:T.237, A:R.258 Water bridges: A:D.136, A:D.137, A:Q.235 Salt bridges: A:K.31, A:K.197, A:K.197 UPG.4: 28 residues within 4Å: Chain B: P.14, A.15, A.16, G.17, K.31, E.32, Q.108, M.111, K.112, G.113, L.114, A.117, L.134, A.135, D.136, D.137, Y.176, G.177, E.196, K.197, I.209, I.210, G.211, Y.213, Q.235, T.237, R.258 Ligands: MG.5 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.16, B:G.17, B:E.32, B:Q.108, B:Q.108, B:K.112, B:G.113, B:D.136, B:G.177, B:T.237, B:R.258 Water bridges: B:D.136, B:D.136, B:D.136, B:D.136 Salt bridges: B:K.31, B:K.197 UPG.6: 28 residues within 4Å: Chain C: P.14, A.15, A.16, G.17, K.31, E.32, Q.108, M.111, K.112, G.113, L.114, A.117, L.134, A.135, D.136, D.137, Y.176, G.177, E.196, K.197, I.209, I.210, G.211, Y.213, Q.235, T.237, R.258 Ligands: MG.8 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:A.16, C:G.17, C:E.32, C:Q.108, C:Q.108, C:G.113, C:D.137, C:G.177, C:E.196, C:G.211, C:T.237, C:T.237 Water bridges: C:K.31, C:K.31, C:R.258 Salt bridges: C:K.31, C:K.197, C:K.197 UPG.9: 29 residues within 4Å: Chain D: P.14, A.15, A.16, G.17, K.31, E.32, Q.108, M.111, K.112, G.113, L.114, A.117, L.134, A.135, D.136, D.137, Y.176, G.177, E.196, K.197, I.209, I.210, G.211, Y.213, Q.235, I.236, T.237, R.258 Ligands: MG.10 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:A.16, D:G.17, D:K.31, D:E.32, D:Q.108, D:Q.108, D:K.112, D:G.113, D:D.137, D:G.177, D:I.209, D:Y.213, D:T.237, D:R.258 Water bridges: D:Q.235, D:Q.235 Salt bridges: D:K.31, D:K.197, D:K.197

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 10 residues within 4Å: Chain A: K.10, E.56, I.57, G.58, T.102, F.103, A.104, L.124, I.125 Chain B: P.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.104, A:L.124 EDO.7: 8 residues within 4Å: Chain C: E.69, D.73, Y.105 Chain D: T.61, K.65, E.69, Y.105, R.107 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.73, D:E.69, D:E.69

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.136, G.262 Ligands: UPG.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.136, H2O.1, H2O.1, H2O.1 MG.5: 4 residues within 4Å: Chain B: K.31, D.136, G.262 Ligands: UPG.4 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.136, H2O.1, H2O.1, H2O.1 MG.8: 4 residues within 4Å: Chain C: K.31, D.136, G.262 Ligands: UPG.6 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.136, H2O.1, H2O.1, H2O.1 MG.10: 3 residues within 4Å: Chain D: D.136, G.262 Ligands: UPG.9 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.136, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dirr, L. et al., Crystal structure of Pseudomonas aeruginosa UDP-glucose phosphorylase in complex with UDP-glucose. To Be Published

Release Date

2023-11-29

Peptides

UTP--glucose-1-phosphate uridylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

C
D

D
E

UTP--glucose-1-phosphate uridylyltransferase

Related Entries With Identical Sequence