SMTL ID : 8f83.1

Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM846

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: W.16, A.17, I.24, G.25, R.26, G.28, G.29, I.30, G.53, R.54, R.55, T.56, S.59, V.75, T.76, R.77, Q.78, G.90, I.108, G.109, G.110, A.111, Q.112, I.113, Y.114, L.116 Ligands: XJZ.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.30, A:T.56 Hydrogen bonds: A:A.17, A:I.24, A:R.26, A:G.28, A:G.53, A:R.54, A:R.54, A:R.55, A:R.55, A:R.55, A:T.56, A:S.59, A:T.76, A:T.76, A:R.77, A:R.77, A:Q.78, A:Q.78, A:G.109, A:G.110, A:A.111, A:Q.112, A:I.113 Water bridges: A:G.28, A:R.77, A:R.77, A:Q.112, A:Q.112 Salt bridges: A:R.54 pi-Cation interactions: A:R.77, A:R.77

1 x XJZ: 3-{2-[3-({2,4-diamino-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid(Non-covalent)

XJZ.2: 19 residues within 4Å: Chain A: I.15, W.16, A.17, I.30, W.32, D.37, L.38, F.41, K.42, L.60, P.61, H.64, L.67, P.68, R.70, I.108, Y.114, T.127 Ligands: NAP.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.30, A:L.38, A:L.60, A:P.61, A:H.64, A:L.67 Hydrogen bonds: A:I.15, A:Y.114, A:T.127, A:T.127 Water bridges: A:H.64 Salt bridges: A:D.37, A:K.42, A:R.70 Halogen bonds: A:W.32

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 3 residues within 4Å: Chain A: D.130, W.156, R.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.130, A:R.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seibold, S. et al., Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium ulcerans Agy99 in complex with NADP and inhibitor MAM846. To be published

Release Date

2023-12-13

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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